Count bait and oe

This function calculate the number of trans interactions for each bait and oe. The word "interactibility" can refer to https://doi.org/10.1038%2Fnature11279.

Usage

# S4 method for class 'linkSet'
countInteractibility(x, baitRegions = TRUE)

Arguments

x

A linkSet object

baitRegions

Whether to count bait regions

Value

A linkSet object with counts for each unique interaction

Examples

data(linkExample)
linkSet = c(linkExample,linkExample)
linkSet = countInteractions(linkSet)
linkSet = countInteractibility(linkSet)