This function takes a linkSet object, identifies repeated interactions
(where both bait and other end are repeated), makes them unique, and
counts the number of repetitions for each unique interaction.
Usage
# S4 method for class 'linkSet'
countInteractions(x, baitRegions = TRUE)
Arguments
- x
A linkSet object
Value
A list containing:
- unique_linkSet
A new linkSet object with unique interactions
- interaction_counts
A data frame with counts for each unique interaction
Examples
ls = data(linkExample)
ls = c(ls,ls)
result <- countInteractions(ls)
#> Error: unable to find an inherited method for function ‘countInteractions’ for signature ‘x = "character"’
result
#> Error in eval(expr, envir, enclos): object 'result' not found
