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Diagnose the linkSet object, return barplot of inter/intra interaction and distance distribution

Usage

# S4 method for class 'linkSet'
diagnoseLinkSet(x)

Examples

data(linkExample)
diagnoseLinkSet(linkExample)
#> `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.

#> linkSet object with 5 interactions and 3 metadata columns:
#>              bait     seqnames_oe ranges_oe | anchor1.symbol  inter_type
#>       <character>           <Rle> <IRanges> |    <character> <character>
#>   [1]       Gene1 ---        chr1     50-59 |          Gene1       inter
#>   [2]       Gene1 ---        chr2   150-159 |          Gene1       intra
#>   [3]       Gene2 ---        chr2   250-259 |          Gene2       inter
#>   [4]       Gene3 ---        chr4   350-359 |          Gene3       intra
#>   [5]       Gene3 ---        chr4   450-459 |          Gene3       inter
#>        distance
#>       <integer>
#>   [1]        49
#>   [2]      <NA>
#>   [3]        50
#>   [4]      <NA>
#>   [5]        50
#>   -------
#>   regions: 10 ranges and 0 metadata columns
#>   seqinfo: 4 sequences from an unspecified genome; no seqlengths