Filter links for further analysis
Usage
# S4 method for class 'linkSet'
filterLinks(x, filter_intra = TRUE, filter_unannotate = TRUE, distance = NULL)
Arguments
- filter_intra
Whether to filter intra-chromosomal interactions
- filter_unannotate
Whether to filter unannotated interactions
- distance
The maximum distance between bait and other end
Value
A linkSet object with filtered interactions
Examples
data(linkExample)
linkSet = c(linkExample,linkExample)
linkSet = countInteractions(linkSet)
linkSet = filterLinks(linkSet, filter_intra = FALSE, filter_unannotate = FALSE, distance = 100000)
