Filter links for further analysis — filterLinks,linkSet-method • linkSet

Filter links for further analysis

Usage

# S4 method for class 'linkSet'
filterLinks(x, filter_intra = TRUE, filter_unannotate = TRUE, distance = NULL)

Arguments

x: A linkSet object
filter_intra: Whether to filter intra-chromosomal interactions
filter_unannotate: Whether to filter unannotated interactions
distance: The maximum distance between bait and other end

Value

A linkSet object with filtered interactions

Examples

data(linkExample)
linkSet = c(linkExample,linkExample)
linkSet = countInteractions(linkSet)
linkSet = filterLinks(linkSet, filter_intra = FALSE, filter_unannotate = FALSE, distance = 100000)