Calculate the distance between bait and the other end — pairdist,linkSet-method • linkSet

Outputs an integer vector specifying the distance between the interacting bins, depending on the type of distance specified.

Example:

   rangeA:  |---------|
   rangeB:                |---------|
   mid:           <----------->
   gap:               <-->
   span:    <----------------------->

mid: Half the distance between the end of first range and start of second range
gap: Distance between the end of first range and start of second range
span: Total span from start of first range to end of second range

Usage

# S4 method for class 'linkSet'
pairdist(x, type = "mid")

Arguments

x: A linkSet object
type: The type of distance to calculate, either "mid", "gap", or "span"

Value

A linkSet object with a new metadata column "distance"

Examples

data(linkExample)
linkExample <- pairdist(linkExample, type="mid")
#> Error: unable to find an inherited method for function ‘pairdist’ for signature ‘x = "linkSet"’