This function reduces the bait and/or oe regions of a linkSet object and optionally counts interactions, while maintaining the original length of the linkSet.
Usage
# S4 method for class 'linkSet'
reduceRegions(x, region = "both", countInteractions = TRUE, ...)Arguments
- x
A linkSet object
- countInteractions
Logical, whether to count interactions after reducing (default: TRUE)
- ...
Additional arguments passed to GenomicRanges::reduce
- reduceBait
Logical, whether to reduce bait regions (default: TRUE)
- reduceOE
Logical, whether to reduce other end (oe) regions (default: TRUE)