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Reduce Regions in a linkSet Object

Source: R/AllGenerics.R, R/GRange_method.R
reduceRegions.Rd

This function reduces the bait and/or oe regions of a linkSet object and optionally counts interactions, while maintaining the original length of the linkSet.

Usage

reduceRegions(x, region = "both", countInteractions = TRUE, ...)

# S4 method for class 'linkSet'
reduceRegions(x, region = "both", countInteractions = TRUE, ...)

Arguments

x

A linkSet object

region

Character, specifying which regions to reduce: "both", "bait", or "oe" (default: "both")

countInteractions

Logical, whether to count interactions after reducing (default: TRUE)

...

Additional arguments passed to GenomicRanges::reduce

Value

A reduced linkSet object with the same length as the input

Details

Reduce a linkSet Object

Examples

data(linkExample)
reduced_ls <- reduceRegions(linkExample, region = "both", countInteractions = TRUE)
#> Error in reduceRegions(linkExample, region = "both", countInteractions = TRUE): unused arguments (region = "both", countInteractions = TRUE)
reduced_ls
#> Error: object 'reduced_ls' not found