Cross gene enhancer

Cross gene enhancer

Usage

# S4 method for class 'linkSet'
crossGeneEnhancer(x, score_threshold = NULL)

Arguments

score_threshold

The minimum score to filter interactions

Value

A linkSet object with filtered interactions

Examples

ls = data(linkExample)
ls = c(ls,ls)
ls = countInteractions(ls)
#> Error: unable to find an inherited method for function ‘countInteractions’ for signature ‘x = "character"’
ls = filterLinks(ls, filter_intra = FALSE, filter_unannotate = FALSE, distance = 100000)
#> Error: unable to find an inherited method for function ‘filterLinks’ for signature ‘x = "character"’
ls = crossGeneEnhancer(ls, score_threshold = 10)
#> Error: unable to find an inherited method for function ‘crossGeneEnhancer’ for signature ‘x = "character"’